FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001281662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001281662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42806536
Sequences flagged as poor quality0
Sequence length49-76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3714740.8677973849600911No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTAT1654960.3866138572857192TruSeq Adapter, Index 19 (97% over 40bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1118890.26138298132789817No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT600240.1402215773778098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)