FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001281671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001281671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47725045
Sequences flagged as poor quality0
Sequence length49-76
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8102771.697802485047421No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2013970.4219943637559692No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN848770.17784582497512574No Hit
ATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGG500960.10496794712294141No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)