FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001281686

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001281686
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26933139
Sequences flagged as poor quality0
Sequence length49-76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4023421.49385483808627No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1793410.665874854022771No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGC1291720.4796024703990129TruSeq Adapter, Index 5 (100% over 50bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT825620.30654429103120884No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)