FastQCFastQC Report
Wed 14 Sep 2022
EGAF00001281687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001281687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26933139
Sequences flagged as poor quality0
Sequence length49-76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7120652.6438247691811934No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1526040.5666030981386907No Hit
ATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGG374290.13897006212309676No Hit
ATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGG329590.12237340771901857No Hit
ATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAA317030.11771000773433798No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)