FastQCFastQC Report
Tue 19 Sep 2023
EGAF00001281722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001281722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50275833
Sequences flagged as poor quality0
Sequence length49-76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3634600.7229318308858255No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC1499130.2981810366026158TruSeq Adapter, Index 12 (100% over 50bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT721100.14342875233912086No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT528440.1051081540508737No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)