FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001281725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001281725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43763525
Sequences flagged as poor quality0
Sequence length49-76
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2988260.6828197682887748No Hit
ATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAA580310.1326012929717156No Hit
ATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGG517920.11834512873448837No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)