FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001281733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001281733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32829372
Sequences flagged as poor quality0
Sequence length49-76
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2602920.7928631714307542No Hit
ATGGGGACATTTGCTTCTGACACAACTGTGTTCACTAGCAACCTCAAACAG1326850.40416551373568765No Hit
ATGGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCT1268850.3864984075845252No Hit
ATGGGGACTCTTCTGGTCCGCACAGACTCAGAGAGAACCCACCATGGTGCT562300.17127954808273518No Hit
ATGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG477570.1454703428381146No Hit
ATGGGACATTTGCTTCTGACACAACTGTGTTCACTAGCAACCTCAAACAGA433260.13197328294918342No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)