FastQCFastQC Report
Fri 24 Mar 2023
EGAF00001281743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001281743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77353185
Sequences flagged as poor quality0
Sequence length49-76
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14379971.8590016687742077No Hit
ATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGG1875860.24250585156900778No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA933840.12072418220400363No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC843600.10905821137164552Illumina Single End PCR Primer 1 (100% over 50bp)

[OK]Adapter Content

Adapter graph