FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001283732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001283732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8104934
Sequences flagged as poor quality0
Sequence length100
%GC29

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTTGTTGTATTTTGTAAAGTGTGATCTGGATTTGATTGGATTTGTTGT1761342.17317007146511No Hit
GATTATGGTGAATTTGATTGAATTCAGATCGTGTTTTATGAAGTGTGATA1417401.7488112796476811No Hit
GATCACGGCGAATCCGATCGAATCTAGCTTGCGCTTTACGAAGTGCGACA1174231.4487841603645384No Hit
AGGCTGTCGCACTTCGTAAAGCGCAAGCTAGATTCGATCGGATTCGCCGT975461.2035384865564607No Hit
GATTACGGTGAATCCGATCGAATTCTTGTAGTGCTTTACGAAGTGTGACA642330.7925172493693348No Hit
AGGTTGTCGTATTTCGTAAAGTGCTACAAGGATTCGATCGGATTTGCCGT593140.7318258236279284No Hit
GATTACGGTGAATCCGATCGAATTAGTCAAGTGCTTTACGAAGTGCGACA553230.6825842135173463No Hit
GATTATGGTGAATTTGATTGAATTGTTTCGGTGTTTTATGAAGTGTGATA509530.6286664394799514No Hit
AGGTTGTTGTATTTTGTAAAGTGTCGAAACGATTTGATTGGATTTGTTGT452700.5585486569045472No Hit
GATTACGGTGAATCTGATCGAATTACAGTGGTGCTTTACGAAGTGTGACA366200.45182354353533294No Hit
AGGCTGTCGTATTTCGTAAAGTGCTTGACTGATTCGATCGGATTTGCCGT247220.3050240754582332No Hit
AGGTTGTCGTATTTCGTAAAGTGCCACTGTGATTCGATCGGATTTGCTGT206280.25451163451793685No Hit
AGGTTGTTGTATTTTGTAAAGTGTGATTTGGATTTGATTGGATTTGTTGT123350.1521912454808392No Hit
AGGTTGTCGTATTTTGTAAAGTGTCGAAACGATTTGATTGGATTTGTTGT115940.14304866640493308No Hit
GATTACGGTGAATTTGATTGAATTGTTTCGGTGTTTTATGAAGTGTGATA107690.13286968160382306No Hit
GATTATGGTGAATTTGATTGAATTCAGATTGTGTTTTATGAAGTGTGATA86330.10651536459149451No Hit
GATCACGGCGAATCCGATCGAATCTAGCTTGCGCTTTACGAAGTGCGATA84460.10420812803657624No Hit
GATTATGGTGAATTTGATTGAATTTAGATCGTGTTTTATGAAGTGTGATA82210.10143204127263714No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)