FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001299798

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001299798
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences572709
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGC12160.21232423447160773TruSeq Adapter, Index 7 (100% over 50bp)
TAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA8860.15470334847191158No Hit
TAACCTTTCTTTTCATAGAGCAGTTAGGAAACACTCTGTTTGTAAAGTCT8220.1435283887628796No Hit
TAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAA6550.11436872827212424No Hit
TAAACTCTGTGAGTTGAACGCACACATCACAAAGGAGTTTCTGAGAATCA6440.11244803207213436No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)