FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001299827

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001299827
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences246504
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGGGGCGGGGAGGGGAAGAGGGGAGATCTCGGGGGGCGCCG4670.18944925842988347No Hit
GATCGGGAGAGGGGCGGGGAGGGGAAGAGGGGAGATCTCGGGGGGCGCCG4240.17200532242884495No Hit
GATCGGGAGAGGGGCGGGGAGGGGAAGAGGGGAGATCTCGGGGGGCGGCG3810.15456138642780645No Hit
GATCGGAAGAGGGGCGGGGAGGGGAAGAGGGGAGATCTCGGGGGGCGGCG3740.1517216759160095No Hit
GATCGGGAGAGGGGCGGGGAGGGGAAGAGGGGAGAACTCGGGGGGCGGCG3230.13103235647291728No Hit
GATCGGAAGAGGGGCGGGGAGGGGAAGAGGGGAGAACTCGGGGGGCGGCG2770.11237140168110862No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)