FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001299952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001299952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389359
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTAT380989.784800145880794TruSeq Adapter, Index 19 (97% over 38bp)
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9340.23988144617178492No Hit
AGTGGGATTCCTGCTGTCAGTTAAACTCTGTGAGTTGAACGCACACATCA3920.10067829432477482No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)