FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001299994

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001299994
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences947484
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTAT66580.7027031591034782TruSeq Adapter, Index 3 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCGCGTAT22450.23694331513777542TruSeq Adapter, Index 3 (97% over 36bp)
AGTGGGATTCCTGCTGTCAGTTAAACTCTGTGAGTTGAACGCACACATCA11020.11630803264223986No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)