FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001300055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001300055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1170576
Sequences flagged as poor quality0
Sequence length138-151
%GC48

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG174451.4902919588305246No Hit
AGTGGGATTCCTGCTGTCAGTTAAACTCTGTGAGTTGAACGCACACATCA14110.12053894834679679No Hit
AGTGGGATTCCTGCTGTCAGTTAAAGTAGTTTTTTCCAATTCTGTGAAGA12330.10533275925698117No Hit
AGTGGGATTCCTGCTGTCAGTTAAGCTGATAAGCAACTTCAGCAAAGTCT12310.10516190319979225No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)