FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001300885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001300885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1353589
Sequences flagged as poor quality0
Sequence length32-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN25390.18757540139584467No Hit
TAACCTTTCTTTTCATAGAGCAGTTAGGAAACACTCTGTTTGTAAAGTCT21350.15772882315089734No Hit
TAAACTCTGTGAGTTGAACGCACACATCACAAAGGAGTTTCTGAGAATCA19810.14635166213673428No Hit
TAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA18000.1329798040616465No Hit
AAACTCTGTGAGTTGAACGCACACATCACAAAGGAGTTTCTGAGAATCAT16860.12455774980440887No Hit
AACCTTTCTTTTCATAGAGCAGTTAGGAAACACTCTGTTTGTAAAGTCTG15220.11244181210101441No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)