FastQCFastQC Report
Wed 20 Nov 2024
EGAF00001301206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001301206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515602
Total Bases77.6 Mbp
Sequences flagged as poor quality0
Sequence length139-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTAT91061.7660908995698232TruSeq Adapter, Index 7 (97% over 36bp)
AGTGGGATTCCTGCTGTCAGTTAAACTCTGTGAGTTGAACGCACACATCA6230.12082963215813748No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)