FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001301216

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001301216
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences753308
Sequences flagged as poor quality0
Sequence length137-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTAT76721.0184413281154587TruSeq Adapter, Index 7 (97% over 36bp)
AGTGGGATTCCTGCTGTCAGTTAAACTCTGTGAGTTGAACGCACACATCA11070.14695184439830722No Hit
AGTGGGATTCCTGCTGTCAGTTAACCTTTCTTTTCATAGAGCAGTTAGGA8110.10765848763055749No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)