FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001301248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001301248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1789696
Sequences flagged as poor quality0
Sequence length151
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTAT1270437.098579870547847TruSeq Adapter, Index 2 (97% over 37bp)
AGTGGGATTCCTGCTGTCAGTTAACCTTTCTTTTCATAGAGCAGTTAGGA21460.1199086325275354No Hit
AGTGGGATTCCTGCTGTCAGTTAAACTCTGTGAGTTGAACGCACACATCA19290.10778366828779859No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)