FastQCFastQC Report
Sun 11 Dec 2022
EGAF00001302103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001302103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416394592
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTATG147923093.5524738515335956TruSeq Adapter, Index 7 (97% over 35bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGAACTCGTATG17169420.4123353263915589TruSeq Adapter, Index 7 (97% over 35bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGAGCTCGTATG12692110.3048096743773272TruSeq Adapter, Index 7 (97% over 35bp)
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC9353090.22462083273166045No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGACCTCGTATG4367340.1048846474932124TruSeq Adapter, Index 7 (97% over 35bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)