FastQCFastQC Report
Sun 8 Jan 2023
EGAF00001302108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001302108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences345974863
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACGTCCTGGTGTAGATCTC87873642.539885101421371Illumina Single End PCR Primer 1 (96% over 32bp)
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC13806380.39905731532871513No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN13652670.3946145070082736No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)