FastQCFastQC Report
Mon 9 Jan 2023
EGAF00001302115

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001302115
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences385743824
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG41258621.0695860162365167TruSeq Adapter, Index 3 (97% over 35bp)
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC24622330.6383078216179036No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCAACTCGTATG4291250.11124611032009679TruSeq Adapter, Index 3 (97% over 35bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)