FastQCFastQC Report
Tue 27 Dec 2022
EGAF00001302122

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001302122
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences382160911
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAAGATTAGTGTAGATCTC118783773.1082134928237073Illumina Single End PCR Primer 1 (96% over 31bp)
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC15996300.4185749913077845No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN8029000.21009474723593594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)