FastQCFastQC Report
Tue 27 Dec 2022
EGAF00001302126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001302126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395623232
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGATAGGGTGTAGATCTC89475472.261633361308772Illumina Single End PCR Primer 1 (96% over 33bp)
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC18603240.47022617721297016No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN11134660.28144606027585356No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)