FastQCFastQC Report
Mon 9 Jan 2023
EGAF00001302162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001302162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393188111
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTTCGCCTGTGTAGATCTC125863173.2010929750620054Illumina Single End PCR Primer 1 (96% over 31bp)
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC14676570.37327095070786614No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN10284260.2615608079767193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)