FastQCFastQC Report
Sat 3 Sep 2022
EGAF00001302183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001302183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446154
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGC45761.0256548187397176TruSeq Adapter, Index 10 (100% over 50bp)
TAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA7160.16048270328182646No Hit
TAACCTTTCTTTTCATAGAGCAGTTAGGAAACACTCTGTTTGTAAAGTCT6350.14232753712843546No Hit
TAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAA4960.11117237545780158No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)