FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001302267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001302267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences728954
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC278503.8205428600432945TruSeq Adapter, Index 12 (100% over 50bp)
TAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAA12620.17312477879262617No Hit
TAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAA8820.12099528914032984No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)