FastQCFastQC Report
Sat 3 Sep 2022
EGAF00001302483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001302483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454420
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTAT75481.6610184410897406TruSeq Adapter, Index 7 (97% over 38bp)
CATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTAT15300.33669292724792044TruSeq Adapter, Index 9 (97% over 35bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)