FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001302503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001302503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences297631
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTAT156575.260540736684015TruSeq Adapter, Index 7 (97% over 38bp)
CATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTAT22850.7677291679966132TruSeq Adapter, Index 9 (97% over 35bp)
AATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTAT3620.12162711545504333TruSeq Adapter, Index 9 (97% over 35bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)