FastQCFastQC Report
Sat 3 Sep 2022
EGAF00001302509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001302509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences584995
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCTCGTAT50870.8695800818810417TruSeq Adapter, Index 13 (97% over 38bp)
CATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCTCGTAT24170.41316592449508116TruSeq Adapter, Index 27 (97% over 37bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)