FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001302523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001302523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences780677
Sequences flagged as poor quality0
Sequence length138-151
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCGGGGGT58270.7464034421406036TruSeq Adapter, Index 6 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCGGGGGG42460.5438869084141073TruSeq Adapter, Index 6 (97% over 36bp)
AGTGGGATTCCTGCTGTCAGTTAAGCCGCTTTGGCCTGGTGGTTCAAGCG8260.10580560206077545No Hit
AGTGGGATTCCTGCTGTCAGTTAATTGAGAAGAGAGGATTTTCGGCTCAT7990.1023470654316702No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)