FastQCFastQC Report
Thu 14 Sep 2023
EGAF00001317807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001317807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35368964
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGAAGAGATCTCGTAT1042340.2947047021224597TruSeq Adapter, Index 7 (97% over 37bp)
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT620710.17549566902779512No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT567700.16050795267851214No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT413870.11701501915634283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)