FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001319067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001319067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3980226
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT49590.12459091518923798No Hit
ATACTATTGTCACCAGTATGGTGGCTCACCGTGGACGTTCGGCCAAGGGA46310.11635017710049629No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC44700.11230518066059567No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC40100.10074804797516523No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)