FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001321439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001321439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3459938
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT103340.2986758722266121No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC92500.26734583105246396No Hit
GACTAACAGTATGCCGTACACGTTTGGCCAGGGGACCAAGCTGGACATCA83240.24058234569521186No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC81830.23650712816241215No Hit
CTATAGTACATCGACTTTGAAAAGTGGGGTCCCATCAAGGTTCAGTGGCA69160.199887974871226No Hit
CTGTTAGTCTGTTGACAGAAATATGTTGCAAAGTCTTCAGGTTGCAGGCT68960.19930992983111256No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG64540.18653513444460568No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT62760.18139053358759608No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT59120.17087011385753154No Hit
ACAGTATGCCGTACACGTTTGGCCAGGGGACCAAGCTGGACATCAAAGGA55450.16026298737145No Hit
GCATTAGCACTTATTTAAATTGGTATCAGCAAAAGTCAGGGAGAGCCCCT54830.15847104774709836No Hit
CCTCCAACATTAGCATAATTAAAGCCAAGGAGGAGGAGGGGGGTGAGGTG54720.15815312297503598No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC54000.15607216083062758No Hit
GTAGGGGACAGAGTCACCATCACTTGCCGGGCGAGTCACAGCATTAGCAC53900.1557831383105709No Hit
GAGTTCACCCTCACCATTAGCAGCCTGCAACCTGAAGACTTTGCAACATA53570.1548293639943837No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGG53210.15378888292217952No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50330.14546503434454605No Hit
ATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCG49890.1441933352562965No Hit
ATAGTACATCGACTTTGAAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGT47650.13771923080702603No Hit
GTACTATAGATGATGAGATCAGGGGCTCTCCCTGACTTTTGCTGATACCA46230.13361511102222062No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA45990.1329214569740845No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTAT45870.13257462995001645No Hit
GTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTG45310.13095610383769885No Hit
CCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATTCAGCAGGCACACAA43930.12696759306091612No Hit
GCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTACTCTGG41550.12008885708356623No Hit
GCGTCAGGGTGCTGCTGAGGCTGTAGGTGCTGTCCTTGCTGTCCTGCTCT41470.11985763906752085No Hit
ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA40170.11610034630678352No Hit
TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG39460.11404828641438083No Hit
GCATACTGTTAGTCTGTTGACAGAAATATGTTGCAAAGTCTTCAGGTTGC38080.11005977563759813No Hit
CCTGAAGACTTTGCAACATATTTCTGTCAACAGACTAACAGTATGCCGTA37490.1083545427692635No Hit
GATGAAGACAGATGGTGCAGCCACAGTTCCTTTGATGTCCAGCTTGGTCC37280.10774759547714438No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC36780.10630248287686081No Hit
GTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTC36410.10523309955265095No Hit
CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG36120.10439493424448645No Hit
ATTAAAGCCAAGGAGGAGGAGGGGGGTGAGGTGAAAGATGAGCTGGAGGA35320.10208275408403271No Hit
GTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCCCTGATGGGTGACTTCGC35290.10199604732801572No Hit
CCATTAGCAGCCTGCAACCTGAAGACTTTGCAACATATTTCTGTCAACAG35040.1012734910278739No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)