FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001321729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001321729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4316157
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT73020.16917827595242713No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT56560.13104249914912733No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC53620.12423088409434598No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA50970.11809116304156685No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG50910.11795215048942843No Hit
TACTAGAAGTGTGAAAACGTAGGCTTGGATTAAGGCGACAGCGATTTCTA48850.11317938619934352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)