FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001321730

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001321730
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4316157
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN355960.8247151343197201No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT64360.14911413092711873No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC51030.11823017559370523No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG49050.11364276137313818No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT48770.11299403612982568No Hit
TACTAGAAGTGTGAAAACGTAGGCTTGGATTAAGGCGACAGCGATTTCTA47090.10910168466995061No Hit
GTGTAGAGGGAAGGTTAATGGTTGATATTGCTAGGGTGGCGCTTCCAATT45070.10442159541462462No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA44140.1022669008564795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)