FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001321832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001321832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3025895
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN258500.8542926968715041No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60370.19951121899471064No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT44060.14560981131202505No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG38630.12766470746671646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)