FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001321914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001321914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5296682
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT107670.20327820322231918No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT80100.1512267491233191No Hit
GTACATGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGAC65610.1238700001246063No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)