FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001321976

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001321976
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences151735
Sequences flagged as poor quality0
Sequence length100
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5360.3532474379675092No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3990.2629584472929779No Hit
TTCCTAGGCCTTGTCAGCTTCAAGGCTTTAATTGAAGAATCTGAAATGAA3610.23791478564602764No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2700.1779418064388572No Hit
GAATAAAGCTGATTTTAAAAGCACACAAAAGTTGAACACAAAGGAGAGGA2670.17596467525620327No Hit
GTCTAAGAAGGTTCTTCTAGGAGGCCCCGCCCCTCCAAATGGTCATTTCT2420.15948858206742017No Hit
GCTTAGAATAAAGCTGATTTTAAAAGCACACAAAAGTTGAACACAAAGGA2230.14696675124394504No Hit
GTACATGGGACCCTGGATGATCAGTTTTCTGCTGAAGGCACCTACTCAGT2190.14433057633373975No Hit
GATTTATTTTTTTTTCCATTTCCAGTTTTTTAAAGTAGACACAGATTTGC1970.12983161432761064No Hit
TTATTAGATAGGTTATTTCCAGTTTTACTTCATGACAAATTACCTAGAGT1820.11994595841434079No Hit
TGTTAGGGTTGTACGGTAGAACTGCTATTATTCATCCTATGTGGGTAATT1810.11928691468678947No Hit
GTACATGGGGTGTATGTATGCCAAGGAGACCGTGGGCTTTGGAATGCTCA1770.11665073977658418No Hit
ATTTAAAGCATTGCAAACATTTGTAAGTTACATTTCTAGACAAGAACTGA1760.11599169604903285No Hit
CCCTAGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATT1750.11533265232148153No Hit
GTCTTGCTCTGTCATCTCAACTGGAGTGCAGTGGCATGGTCGTGGCTCAC1750.11533265232148153No Hit
GGCTATAGCAATAAAACTAGGAATAGCCCCCTTTCACTTCTGAGTCCCAG1740.1146736085939302No Hit
GTATTATTAGATAGGTTATTTCCAGTTTTACTTCATGACAAATTACCTAG1710.11269647741127624No Hit
GGGTGTATGTATGCCAAGGAGACCGTGGGCTTTGGAATGCTCAAGGCCAA1590.10478795268066037No Hit
GTTTATTACTACTGGTATGAAATTCAGAGGAGACTGGTTTTGTCAGTTCT1540.10149273404290375No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)