FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001321994

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001321994
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3177563
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60860.1915304275635133No Hit
ATATAGGCATGAGCCACTGAGCCTGGCCCAGAAGCGTTTTTCTCAAAGGC49380.1554021116182433No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT47440.14929680387139452No Hit
GTCTTTAATCATTAATTGTCATATTTCTGATTTGTTAGCAAGTGCCAGCT34100.10731494544718706No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)