FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001322006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001322006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences143902
Sequences flagged as poor quality0
Sequence length100
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2050.14245806173645953No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1770.12300037525538213No Hit
GGCCAGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGA1680.1167461188864644No Hit
GACTAAGAGTGTCGGTGTGGAGGAGGGGGACCACCGATTTGGAGCAACGT1600.11118677989187087No Hit
CCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACGAGGTCG1590.11049186251754665No Hit
GGCTAACACGGTGAAACTAAAAATACAAAAAGTTAGCCGGGTGTGGTGGC1560.1084071103945741No Hit
GGCTGGAGTGCAGTGATGCGATCTCAACTCACTGCAACCTCCGCCTCCCA1490.10354268877430474No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)