FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001322042

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001322042
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485421
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14040.28923346950379153No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11070.22804946633952794No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6150.1266941479664044No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5520.11371572305277275No Hit
ATACAATATAGCATCAATGCTGAATAGCATGATTATGTGCAATACATAAA5460.11247968258480782No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)