FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001322055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001322055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1675474
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT91220.5444429456977548No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT70370.4200005490983447No Hit
GTATATGGGTAGTGGCAATTGGGTGTTCGGCGGAGGGACCAAGGTGACCG49350.29454351425327996No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT41260.24625867068065513No Hit
CCCATATACAGAACACAATAATAATCACATTCATCATCTGCCTGGGCCCC32880.19624297363014884No Hit
TATTTATTGAGGGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGG24790.14795813005752403No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGA22050.13160454892167828No Hit
CTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGT19590.11692213666102846No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCA18790.11214736844618299No Hit
GGGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAG16870.10068792473055387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)