FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001322056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001322056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1675474
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT80960.4832065433423616No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT57400.3425896194151625No Hit
GTATATGGGTAGTGGCAATTGGGTGTTCGGCGGAGGGACCAAGGTGACCG49770.29705026756607383No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33240.1983916193268293No Hit
CCCATATACAGAACACAATAATAATCACATTCATCATCTGCCTGGGCCCC31050.18532069133868984No Hit
TATTTATTGAGGGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGG21490.12826221117128647No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGA19980.11924983616576562No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN17490.1043883700970591No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT17280.10313499344066217No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCA17010.10152350916815182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)