FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001322183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001322183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2678374
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT118000.4405658059703387No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT81890.3057452021263647No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT51260.19138477300033527No Hit
CTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGT36720.13709810504432912No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG33010.12324641741593967No Hit
TCTATAGGGTGATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTATAT30190.1127176413749536No Hit
GGGTAAATACGGGCCCTATTTCAAAGATTTTTAGGGGAATTAATTCTAGG29850.11144821447639501No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG27420.10237554576022617No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)