FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001322187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001322187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2681705
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60880.22701975049455478No Hit
CTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGT49470.18447219213149843No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT46040.17168182182603978No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)