FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001323095

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001323095
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4205366
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGT74290.1766552542632437No Hit
ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA48930.11635134730247022No Hit
CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG43280.10291613143778686No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)