FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001323237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001323237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1806387
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT63200.3498696569450511No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT53470.2960052303299348No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36190.20034466589938923No Hit
ACTTAATACAGTGAGAAATTTGGACTCTCGGATGAATCAACTGGAGACAA32100.17770278461924272No Hit
GTGTTACAGTGTCCTAATGCAGGCATGGATAGTGACTTGCAAGTGCATGA30800.17050609863777808No Hit
GTATTAAGTATCTCGTTCACATTCAGAGCAAGTGACTGGACACTGGTGAC29190.16159327984534877No Hit
CTGTAACACATATCTAAAAAAGTCTCAATCTCATCCCATGCAGTTCCCTC25790.14277117804767198No Hit
GCTATATAGCTATGCTATGGGAATAGGCTATGTGTTAGATGTCAACATGA24000.13286189504242446No Hit
GGGTTAGTACAGTGTCATACCAGTGTAGTGTAATGGGGTGTTTCTTGATC22800.12621880029030325No Hit
GTCCTAATGCAGGCATGGATAGTGACTTGCAAGTGCATGACTGCGCCAGA22360.12378299888119212No Hit
GTATATAGAGAATTGTGGAATGGGAGGCTTCTTTTTGACACTAAAATATG20720.11470410271995979No Hit
GCTATATAGCAGTGGGTAGTTTGCTGCAGCAAAATCCATCAAATGTGGTG20410.11298796990899514No Hit
ATATAGCAGTGGGTAGTTTGCTGCAGCAAAATCCATCAAATGTGGTGACT20300.11237901955671735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)