FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001323238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001323238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1806387
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTAATACAGTGAGAAATTTGGACTCTCGGATGAATCAACTGGAGACAA27970.15483946684735883No Hit
GTGTTACAGTGTCCTAATGCAGGCATGGATAGTGACTTGCAAGTGCATGA25440.14083360874496992No Hit
GTATTAAGTATCTCGTTCACATTCAGAGCAAGTGACTGGACACTGGTGAC25100.13895139856520225No Hit
GCCCATAATAAATCCGCTACCGACGCTGACTAACATTTCGCGATCGTTCA23050.12760277836366185No Hit
CTGTAACACATATCTAAAAAAGTCTCAATCTCATCCCATGCAGTTCCCTC20110.11132719622096485No Hit
GTCCTAATGCAGGCATGGATAGTGACTTGCAAGTGCATGACTGCGCCAGA18070.10003393514235875No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)