FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001323243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001323243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68277
Sequences flagged as poor quality0
Sequence length100
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3280.48039603380347695No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2770.40570030903525345No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2400.3515092930269344No Hit
GTGTTACAGTGTCCTAATGCAGGCATGGATAGTGACTTGCAAGTGCATGA730.10691740996235921No Hit
ACTTAATACAGTGAGAAATTTGGACTCTCGGATGAATCAACTGGAGACAA700.10252354379952254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)