FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001323279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001323279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3076387
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTAATACAGTGAGAAATTTGGACTCTCGGATGAATCAACTGGAGACAA113170.367866591556914No Hit
GTATTAAGTATCTCGTTCACATTCAGAGCAAGTGACTGGACACTGGTGAC72290.23498343998983223No Hit
GGGTTAGTACAGTGTCATACCAGTGTAGTGTAATGGGGTGTTTCTTGATC62300.2025102823539431No Hit
GTGTCATACCAGTGTAGTGTAATGGGGTGTTTCTTGATCAAATTGCACTG46280.15043620974864344No Hit
GTCTTATCTTGTTCCAAGAGTTGCAGGTCGATTTTTCTCACTGAGATCAG45680.14848586995069216No Hit
GTGTAGTGTAATGGGGTGTTTCTTGATCAAATTGCACTGCGGATGATTGC44630.1450727753042774No Hit
GTTGTAATCATTCCTTCTAAAGTAGCCATCCCTGCTTTAAGTCCAACTAT44440.1444551677015928No Hit
CTTTATTGGTGCCCGACCATCATTTAGGTGAGAAAACCCTCTCTACTTTG39060.1269671208466295No Hit
CAACTACACTGAGCAAGATTATTAATATTAAACCTAACGATCCAAGACAG38630.12556937732476442No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT38400.12482174706888308No Hit
TCATTTAGGTGAGAAAACCCTCTCTACTTTGGCGCGACTGCGTGAACGCG36370.11822309741914785No Hit
GTACATGGGGGGAATTCGTGGAGAAAGAAATGGCTCGTCTGGCAGCATTT35230.11451745180304038No Hit
GTTATATATAATCTGATTTGCGACAGAGAGAATATTATTAAGAAGATCAG33350.10840638710279298No Hit
ACCAAAGGCCGTGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCA33020.10733370021391976No Hit
CTATAAGGGGGTTAAGCTTGCGAAATTTGGAAAAGAAAATCTGATGACAC32700.10629351898834574No Hit
CTACTAGCCTTAAGCATCTCTATCCTTTATGAAAGTTTAATAACCCAAAA32470.10554588873246441No Hit
GTACAGTGTCATACCAGTGTAGTGTAATGGGGTGTTTCTTGATCAAATTG32410.1053508547526693No Hit
GTACATGGGGAGGCCCGGACGGGTTAGCAACAAGCGACTGCCGGTGCCAA32240.10479825847658308No Hit
GGTTAGTACAGTGTCATACCAGTGTAGTGTAATGGGGTGTTTCTTGATCA32240.10479825847658308No Hit
CCCTTATAGGATCCTGATGGTAATGTTTTCCCACTTAGATCAAGCACAGT32210.10470074148668553No Hit
ATGTAAAAGTTCACCTTCCAGAGAATGCACGCGCGTTCCGTTGCCGGTAA31230.10151518648336506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)